PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02660.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 360aa    MW: 41034.2 Da    PI: 5.6146
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02660.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.51.1e-3961363128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 
                              +G+rF+Pt ee++++yLk+k+ +k+  ++e+i+e++iy ++P+ Lp  +k+++++  wyfF++r+ +++  +k ++r+t sg+Wka
  Rsa1.0_02660.1_g00002.1   6 VGYRFSPTGEEVINYYLKNKILDKPWLVDEAIREINIYAYNPEFLPslSKIESKDLVWYFFCRRECQATDkKKGTKRTTPSGFWKA 91 
                              7************************999999***************5448888888********9888752667888********* PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgkd+ +++k  +g ++g+kktLv+++g+a +g+kt Wv+hey++
  Rsa1.0_02660.1_g00002.1  92 TGKDRIIKEKrgHGVEIGIKKTLVYHHGKAANGVKTPWVIHEYHI 136
                              ********99777788***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.1824154IPR003441NAC domain
SuperFamilySSF1019411.7E-435154IPR003441NAC domain
PfamPF023651.1E-236136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERNLVGYRF SPTGEEVINY YLKNKILDKP WLVDEAIREI NIYAYNPEFL PSLSKIESKD  60
LVWYFFCRRE CQATDKKKGT KRTTPSGFWK ATGKDRIIKE KRGHGVEIGI KKTLVYHHGK  120
AANGVKTPWV IHEYHITSLP LNQRKYVICQ VKYKGEDSLY GNNSNELSHS TMVSDLNTAR  180
VINTTPVVEQ QRDEDLCMSV DDLPNPLNEQ DDPSLFDPDM FFNDNECSYQ EPLASYDDDD  240
NISELLKYNG GNHADVLGDL DIILQEHRND HRPKKALTGI IVDCSSGSDD AESICATSYQ  300
GTSSPDSVHS LSAQFHTSVD EIPSLRKDSF TDIQLIGFSY RKLSILKLSF VFRIEMIKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-20713620142NAC domain-containing protein 19
4dul_A1e-20713620142NAC domain-containing protein 19
1ut7_B1e-20713620142NO APICAL MERISTEM PROTEIN
1ut7_A1e-20713620142NO APICAL MERISTEM PROTEIN
1ut4_B1e-20713620142NO APICAL MERISTEM PROTEIN
1ut4_A1e-20713620142NO APICAL MERISTEM PROTEIN
3swp_D1e-20713623145NAC domain-containing protein 19
3swp_C1e-20713623145NAC domain-containing protein 19
3swp_B1e-20713623145NAC domain-containing protein 19
3swp_A1e-20713623145NAC domain-containing protein 19
3swm_D1e-20713623145NAC domain-containing protein 19
3swm_C1e-20713623145NAC domain-containing protein 19
3swm_B1e-20713623145NAC domain-containing protein 19
3swm_A1e-20713623145NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204390.0KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713408.10.0PREDICTED: NAC domain-containing protein 69-like isoform X1
SwissprotQ9M1261e-112NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A078F1750.0A0A078F175_BRANA; BnaCnng01510D protein
TrEMBLA0A0D3DZV30.0A0A0D3DZV3_BRAOL; Uncharacterized protein
STRINGBra036327.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-114NAC domain containing protein 69